PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10676_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 452aa    MW: 49009.3 Da    PI: 6.2756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10676_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.5e-09273321355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  RrC10676_p1 273 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 321
                  58*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.16E-11268325No hitNo description
SuperFamilySSF474592.36E-17268339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.478270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-17271338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-6273321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10276326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDTSEKEEFS GEKRNDNHPA DWRVSGPNPV SAPPFGSYPT ENLITSSCSP SQMMDSFGQT  60
LWYDPTNVQA VGYGGSSSSS CFRGGMDWSL PNLLPPKGNG LFLPNASSFL PPSMAQFPAD  120
SGFIERAARF SLFSDMVNQP LGSPESVGLF VQGQCPSSEV NVGVVAHNNV IRCSEQGSKP  180
NVSEDTQSSG QKGGETSSKG FDSKKRKRNR QSSEAEQSQR SEEEAENNGG DKKEQSPNSP  240
GNKTNSGKQQ GKQASDPKDG YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC  300
NKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPQMDF NLEGLLAKDV RELQLRGGSS  360
SATPFPTQNM SMVYPPLPHG FMQQQTLSSV GRTISSPLSP MNGGYKRQET NGWEGDLQNV  420
IHINYGAGDV PSDPEAAAAT ASLPSSNMKV EP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3189370.0AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.
GenBankAY1282990.0AY128299.1 Arabidopsis thaliana At1g68920/T6L1_10 mRNA, complete cds.
GenBankBT0022590.0BT002259.1 Arabidopsis thaliana At1g68920/T6L1_10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614310.10.0PREDICTED: transcription factor bHLH49 isoform X1
SwissprotQ9CAA90.0BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A0D3AP450.0A0A0D3AP45_BRAOL; Uncharacterized protein
STRINGBra004348.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.20.0bHLH family protein